Aaron Mitchell-Dick
Home
Raw Reads to kallisto
Kallisto to DESeq2
Install Packages
About and References
Aaron Mitchell-Dick
AMD Bioinformatics
Easy to follow bioinformatics workflows on the command line, bash (Linux), R, Python, and github.
RNA-Seq
Going from raw sequencing reads to kallisto pseudoalignment mapping.
Raw Sequencing Reads -> filtering(FastQC, TrimGalore) -> kallisto
Using kallisto abundance files for differential expression analysis.
kallisto abundance.h5 -> tximport -> DESeq2
Installing necessary programs and packages:
Install Packages
About the webpage and author
Github
Google Scholar Citations